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    Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12893-8. Epub 2004 Aug 18.

    tRNA dynamics on the ribosome during translation.

    Blanchard SC, Kim HD, Gonzalez RL Jr, Puglisi JD, Chu S.

    Department of Physics and Applied Physics, Stanford University, Stanford, CA 94305-4060, USA.

    Using single-molecule fluorescence spectroscopy, time-resolved conformational changes between fluorescently labeled tRNA have been characterized within surface-immobilized ribosomes proceeding through a complete cycle of translation elongation. Fluorescence resonance energy transfer was used to observe aminoacyl-tRNA (aa-tRNA) stably accommodating into the aminoacyl site (A site) of the ribosome via a multistep, elongation factor-Tu dependent process. Subsequently, tRNA molecules, bound at the peptidyl site and A site, fluctuate between two configurations assigned as classical and hybrid states. The lifetime of classical and hybrid states, measured for complexes carrying aa-tRNA and peptidyl-tRNA at the A site, shows that peptide bond formation decreases the lifetime of the classical-state tRNA configuration by approximately 6-fold. These data suggest that the growing peptide chain plays a role in modulating fluctuations between hybrid and classical states. Single-molecule fluorescence resonance energy transfer was also used to observe aa-tRNA accommodation coupled with elongation factor G-mediated translocation. Dynamic rearrangements in tRNA configuration are also observed subsequent to the translocation reaction. This work underscores the importance of dynamics in ribosome function and demonstrates single-particle enzymology in a system of more than two components. Copyright 2004 The National Academy of Sciencs of the USA

    PMID: 15317937 [PubMed - indexed for MEDLINE]

    PMCID: PMC516491

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