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Haploview: analysis and visualization of LD and haplotype maps.
Whitehead Institute for Biomedical Research Cambridge, MA 02142, USA. jcbarret@broad.mit.edu
SUMMARY: Research over the last few years has revealed significant haplotype structure in the human genome. The characterization of these patterns, particularly in the context of medical genetic association studies, is becoming a routine research activity. Haploview is a software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface. AVAILABILITY: http://www.broad.mit.edu/mpg/haploview/ CONTACT: jcbarret@broad.mit.edu
PMID: 15297300 [PubMed - indexed for MEDLINE]
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Cited by over 100 PubMed Central articles
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Targeting 160 candidate genes for blood pressure regulation with a genome-wide genotyping array.
Sõber S, Org E, Kepp K, Juhanson P, Eyheramendy S, Gieger C, Lichtner P, Klopp N, Veldre G, Viigimaa M, et al.
PLoS One. 2009 Jun 29; 4(6):e6034. Epub 2009 Jun 29.
[PLoS One. 2009]
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Genetic variation of promoter sequence modulates XBP1 expression and genetic risk for vitiligo.
Ren Y, Yang S, Xu S, Gao M, Huang W, Gao T, Fang Q, Quan C, Zhang C, Sun L, et al.
PLoS Genet. 2009 Jun; 5(6):e1000523. Epub 2009 Jun 19.
[PLoS Genet. 2009]
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Comprehensive linkage and association analyses identify haplotype, near to the TNFSF15 gene, significantly associated with spondyloarthritis.
Zinovieva E, Bourgain C, Kadi A, Letourneur F, Izac B, Said-Nahal R, Lebrun N, Cagnard N, Vigier A, Jacques S, et al.
PLoS Genet. 2009 Jun; 5(6):e1000528. Epub 2009 Jun 19.
[PLoS Genet. 2009]
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