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Bioinformatics. 2004 Dec 12;20(18):3710-5. Epub 2004 Aug 5.

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.

Author information

  • 1Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Abstract

SUMMARY:

GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. It can be used to draw conclusions from microarray and other biological data, calculating the statistical significance of each annotation. GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script.

AVAILABILITY:

The full source code and documentation for GO::TermFinder are freely available from http://search.cpan.org/dist/GO-TermFinder/.

PMID:
15297299
[PubMed - indexed for MEDLINE]
PMCID:
PMC3037731
Free PMC Article

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