A novel p-nitrophenol degradation gene cluster from a gram-positive bacterium, Rhodococcus opacus SAO101

J Bacteriol. 2004 Aug;186(15):4894-902. doi: 10.1128/JB.186.15.4894-4902.2004.

Abstract

p-Nitrophenol (4-NP) is recognized as an environmental contaminant; it is used primarily for manufacturing medicines and pesticides. To date, several 4-NP-degrading bacteria have been isolated; however, the genetic information remains very limited. In this study, a novel 4-NP degradation gene cluster from a gram-positive bacterium, Rhodococcus opacus SAO101, was identified and characterized. The deduced amino acid sequences of npcB, npcA, and npcC showed identity with phenol 2-hydroxylase component B (reductase, PheA2) of Geobacillus thermoglucosidasius A7 (32%), with 2,4,6-trichlorophenol monooxygenase (TcpA) of Ralstonia eutropha JMP134 (44%), and with hydroxyquinol 1,2-dioxygenase (ORF2) of Arthrobacter sp. strain BA-5-17 (76%), respectively. The npcB, npcA, and npcC genes were cloned into pET-17b to construct the respective expression vectors pETnpcB, pETnpcA, and pETnpcC. Conversion of 4-NP was observed when a mixture of crude cell extracts of Escherichia coli containing pETnpcB and pETnpcA was used in the experiment. The mixture converted 4-NP to hydroxyquinol and also converted 4-nitrocatechol (4-NCA) to hydroxyquinol. Furthermore, the crude cell extract of E. coli containing pETnpcC converted hydroxyquinol to maleylacetate. These results suggested that npcB and npcA encode the two-component 4-NP/4-NCA monooxygenase and that npcC encodes hydroxyquinol 1,2-dioxygenase. The npcA and npcC mutant strains, SDA1 and SDC1, completely lost the ability to grow on 4-NP as the sole carbon source. These results clearly indicated that the cloned npc genes play an essential role in 4-NP mineralization in R. opacus SAO101.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Biodegradation, Environmental
  • Chlorophenols / metabolism
  • Cloning, Molecular
  • Dioxygenases*
  • Mixed Function Oxygenases / genetics
  • Mixed Function Oxygenases / metabolism
  • Molecular Sequence Data
  • Multigene Family*
  • Nitrophenols / metabolism*
  • Oxygenases / genetics
  • Oxygenases / metabolism
  • Phylogeny
  • Polymerase Chain Reaction
  • Rhodococcus / enzymology*
  • Rhodococcus / genetics
  • Rhodococcus / metabolism
  • Sequence Analysis, DNA

Substances

  • Bacterial Proteins
  • Chlorophenols
  • Nitrophenols
  • Mixed Function Oxygenases
  • Oxygenases
  • Dioxygenases
  • hydroxyquinol 1,2-dioxygenase
  • phenol 2-monooxygenase
  • 2,4,6-trichlorophenol

Associated data

  • GENBANK/AB154422