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Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W500-2.

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins.

Author information

  • 1Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85354 Freising, Germany.

Abstract

STRIDE is a software tool for secondary structure assignment from atomic resolution protein structures. It implements a knowledge-based algorithm that makes combined use of hydrogen bond energy and statistically derived backbone torsional angle information and is optimized to return resulting assignments in maximal agreement with crystallographers' designations. The STRIDE web server provides access to this tool and allows visualization of the secondary structure, as well as contact and Ramachandran maps for any file uploaded by the user with atomic coordinates in the Protein Data Bank (PDB) format. A searchable database of STRIDE assignments for the latest PDB release is also provided. The STRIDE server is accessible from http://webclu.bio.wzw.tum.de/stride/.

PMID:
15215436
[PubMed - indexed for MEDLINE]
PMCID:
PMC441567
Free PMC Article

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