Bioinformatics. 2004 Nov 22;20(17):3252-5. Epub 2004 Jun 4.

Automatic annotation of organellar genomes with DOGMA.

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Department of Computer Sciences, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. stacia@cs.utexas.edu

Abstract

The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar (plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. DOGMA provides a graphical user interface for viewing and editing annotations. Annotations are stored on our password-protected server to enable repeated sessions of working on the same genome. Finished annotations can be extracted for direct submission to GenBank.

PMID:: 15180927; [PubMed - indexed for MEDLINE]

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