Display Settings:


Send to:

Choose Destination
See comment in PubMed Commons below
Bioinformatics. 2004 Sep 1;20(13):2156-8. Epub 2004 May 14.

Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data.

Author information

  • 1Bioinformatics Core, Arizona Cancer Center, University of Arizona, Tucson, AZ 85724, USA.


We have developed a web-based system (Pathway Miner) for visualizing gene expression profiles in the context of biological pathways. Pathway Miner catalogs genes based on their role in metabolic, cellular and regulatory pathways. A Fisher exact test is provided as an option to rank pathways. The genes are mapped onto pathways and gene product association networks are extracted for genes that co-occur in pathways. The networks can be filtered for analysis based on user-selected options.


Pathway Miner is a freely available web accessible tool at http://www.biorag.org/pathway.html

[PubMed - indexed for MEDLINE]
Free full text
PubMed Commons home

PubMed Commons

How to join PubMed Commons

    Supplemental Content

    Icon for HighWire
    Loading ...
    Write to the Help Desk