Transcriptomic analysis of P301L and wild-type mice with Affymetrix chips. To identify differentially expressed genes in P301L tau transgenic mice, the Affymetrix microarray chip technology was applied (A). Of the ≈6,000 known genes and 6,000 expressed sequence tags on the MG-U74Av2 chip, 40% were present in both P301L and wild-type mice. Based on absolute signal intensities of the present genes, we identified, by either the t test or the Mann–Whitney U test (P ≤ 0.05), 133 up-regulated and 99 down-regulated genes in P301L brain. Of these, 46 genes were significantly up-regulated and 14 were down-regulated by both tests. To avoid false positives, a cutoff of 400 units was chosen. A further selection step was included by applying a highly stringent pairwise comparison, narrowing down the number of increased genes to just one, GLO, that was 1.6-fold up-regulated in P301L brains (P = 0.003, t test). Northern blotting of three P301L and three control RNAs followed by densitometric analysis revealed 1.5-fold increased GLO mRNA levels in P301L compared with control brains (P = 0.045, t test) (B). The GLO-(2.0 kb) and β-actin-specific (1.9 kb) bands are shown for one pair of P301L and control RNA samples.