Genome Biol. 2004;5(5):223. Epub 2004 Apr 16.

Maize DNA-sequencing strategies and genome organization.

Source

Department of Agronomy and Plant Genetics, and Center for Plant and Microbial Genomics, The University of Minnesota, St Paul, MN 55108, USA. okagaoo2@tc.umn.edu

Abstract

A large amount of repetitive DNA complicates the assembly of the maize genome sequence. Genome-filtration techniques, such as methylation-filtration and high-CoT separation, enrich gene sequences in genomic libraries. These methods may provide a low-cost alternative to whole-genome sequencing for maize and other complex genomes.

PMID:: 15128439; [PubMed - indexed for MEDLINE]
PMCID:: PMC416461

Free PMC Article

Publication Types, MeSH Terms, Substances

Publication Types

Review

MeSH Terms

Substances

DNA, Plant

LinkOut - more resources

Full Text Sources

Other Literature Sources

Labome Researcher Resource - ExactAntigen/Labome

Supplemental Content

Save items

Related citations in PubMed

Maize genome sequencing by methylation filtration. [Science. 2003]
Maize genome sequencing by methylation filtration.
Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR. Science. 2003 Dec 19; 302(5653):2115-7.
Reduced representation sequencing: a success in maize and a promise for other plant genomes. [Bioessays. 2005]
Reduced representation sequencing: a success in maize and a promise for other plant genomes.
Barbazuk WB, Bedell JA, Rabinowicz PD. Bioessays. 2005 Aug; 27(8):839-48.
Enrichment of gene-coding sequences in maize by genome filtration. [Science. 2003]
Enrichment of gene-coding sequences in maize by genome filtration.
Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, et al. Science. 2003 Dec 19; 302(5653):2118-20.
Review The maize genome as a model for efficient sequence analysis of large plant genomes. [Curr Opin Plant Biol. 2006]
Review The maize genome as a model for efficient sequence analysis of large plant genomes.
Rabinowicz PD, Bennetzen JL. Curr Opin Plant Biol. 2006 Apr; 9(2):149-56. Epub 2006 Feb 3.
Review Organization and variability of the maize genome. [Curr Opin Plant Biol. 2006]
Review Organization and variability of the maize genome.
Messing J, Dooner HK. Curr Opin Plant Biol. 2006 Apr; 9(2):157-63. Epub 2006 Feb 3.

See reviews... See all...

Cited by 2 PubMed Central articles

A single molecule scaffold for the maize genome. [PLoS Genet. 2009]
A single molecule scaffold for the maize genome.
Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, et al. PLoS Genet. 2009 Nov; 5(11):e1000711. Epub 2009 Nov 20.
Databases and information integration for the Medicago truncatula genome and transcriptome. [Plant Physiol. 2005]
Databases and information integration for the Medicago truncatula genome and transcriptome.
Cannon SB, Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, et al. Plant Physiol. 2005 May; 138(1):38-46.

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
References for this PMC Article
Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
Free in PMC
Free full text articles in PMC
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

Maize DNA-sequencing strategies and genome organization.
Maize DNA-sequencing strategies and genome organization.
Genome Biol. 2004 ;5(5):223. Epub 2004 Apr 16 .

PubMed
Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for...
Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for cellular machinery.
Eur J Biochem. 2004 May ;271(10):1835-48.

PubMed
The scanning laser ophthalmoscope--a review of its role in bioscience and medici...
The scanning laser ophthalmoscope--a review of its role in bioscience and medicine.
Phys Med Biol. 2004 Apr 7 ;49(7):1085-96.

PubMed
Delayed recognition of lumbosacral fracture dislocations in the multitrauma pati...
Delayed recognition of lumbosacral fracture dislocations in the multitrauma patient: the triad of transverse process fractures, unilateral renal contusion and lumbosacral fracture dislocation.
J Trauma. 2004 Mar ;56(3):700-5.

PubMed
Helical computed tomographic angiography for the diagnosis of traumatic arterial...
Helical computed tomographic angiography for the diagnosis of traumatic arterial injuries of the extremities.
J Trauma. 2004 Mar ;56(3):625-8.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: