(A) Dot blot of peak fractions from cesium gradient-purified AAV mixtures. 293 cells were transfected with AAV1 to AAV5 plasmids (AAV column) or combinations of the five serotypes (AAV serotype mixtures 1/2, 1/3, 1/4, 1/5, 2/3, 2/4, 2/5, 3/4, 3/5, and 4/5) at differing ratios (19:1, 3:1, 1:1, 1:3, and 1:19). The fractions on top of the blot indicate the AAV serotype helper plasmid contributors in the mixture and the ratios on the left side of the blot correspond to the relative amounts of all contributors in the mixture, respectively. Portions (2 μl) from the peak fraction of each cesium-purified virus preparation were applied to a GeneScreen Plus membrane and then probed with the GFP transgene that had been random primed. Duplicate DNA controls of the plasmid transgene are shown at the bottom of the blot. (B) Hirt DNA Southern blot analyses of AAV1/2, AAV1/3, AAV1/4, and AAV1/5 mixtures. 293 cells were transfected with either the AAV1 to AAV5 helper plasmids (AAV serotype lanes) or all ratios (19:1, 3:1, 1:1, 1:3, and 1:19) of the AAV1/2, AAV1/3, AAV1/4, and AAV1/5 helper plasmids to produce rAAV. Low-molecular-weight DNA was isolated 48 h posttransfection, and a portion was digested with DpnI. Then, 3 μg of DpnI-digested (top panel) or undigested (bottom panel) DNA was separated via a 1% agarose gel (M lane, DNA ladder). After transfer, the blot was probed with a random-primed GFP transgene. (C) Analyses of capsid protein composition from the AAV1/4 mixtures. Protein lysates from the transfection of either the AAV1 and AAV4 helper plasmids alone or mixed at different ratios (19:1, 3:1, 1:1, 1:3, and 1:19) were resolved by sodium dodecyl sulfate-10% polyacrylamide gel electrophoresis and transferred to a membrane. The blot was probed with either the B1 monoclonal antibody (top panel) directed against the carboxyl termini of the AAV2 VP3 protein or an anti-GFP antibody (bottom panel). (D) Transmission electron microscopy. Peak dot blot fractions of the AAV1/5 mixed virions (1:3 ratio) and rAAV2 were stained in 2% phosphotungstic acid and imaged by transmission electron microscopy. Arrows indicate potential fivefold capsid subunits.