SPrCY: comparison of structural predictions in the...[Bioinformatics. 2004]

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1: Bioinformatics. 2004 Sep 22;20(14):2312-4. Epub 2004 Apr 1. Links

SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome.

Dolinsky TJ, Burgers PM, Karplus K, Baker NA.

Department of Biochemistry and Molecular Biophysics, Center for Computational Biology, Washington University in St Louis, St Louis, MO 63110, USA.

SUMMARY: SPrCY is a web-accessible database which provides comparison of structure prediction results for the Saccharomyces cerevisiae genome. This web service offers the ability to search, analyze and compare the yeast structural predictions from sequence-only (Superfamily, PDBAA BLAST and Pfam) and sequence-structure-based (SAM-T02, 3D-PSSM, mGenTHREADER) methods. AVAILABILITY: The service is freely available via web at http://agave.wustl.edu/yeast/

PMID: 15059824 [PubMed - indexed for MEDLINE]

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics. [BMC Bioinformatics. 2006]
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. [Nucleic Acids Res. 2004]
The SSEA server for protein secondary structure alignment. [Bioinformatics. 2005]
The DynDom database of protein domain motions. [Bioinformatics. 2003]
YETI: Yeast Exploration Tool Integrator. [Bioinformatics. 2004]
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SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome.

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