pH and bicarbonate/CO2 gradients. Shown are the alterations made in the interdependent pH, bicarbonate, and CO2 concentrations in the mucus layer. (A) The normal conditions with a low luminal pH of 3 in either the infected or the uninfected mucosa. This luminal pH induces a pH of 6 in the juxtamucosal mucus. Under these conditions, secreted bicarbonate and diffused CO2 have the same concentration in the juxtamucosal mucus, whereas at the luminal side of the mucus layer, the bicarbonate concentration is low and the pCO2 high. The neutralization of the juxtamucosal mucus to pH 6 is caused by active bicarbonate secretion and a neutral pH in the newly secreted mucus. (B-D) To eliminate the pH bicarbonate/CO2 gradient, the luminal pH was neutralized to 6, and three different constellations of arterial pH, bicarbonate and CO2 were tested. (B) The first alteration of the gradient was achieved by doubling the inspiratory CO2 fraction, bicarbonate concentrations maintained at normal values through dialysis. This caused a low arterial pH with a normal bicarbonate concentration. (C) In the second constellation, a reduced arterial bicarbonate concentration was combined with a normal pH. This was achieved by reducing the arterial pCO2 through hyperventilation and lowering the bicarbonate concentration through dialysis. Neither the first nor the second alteration affected bacterial orientation. (D) However, a combined reduction of arterial pH and bicarbonate concentration through dialysis caused a loss of bacterial orientation, the bacteria spreading over the entire mucus layer.