Crimean-Congo hemorrhagic fever virus genome L RNA segment and encoded protein

Virology. 2004 Mar 30;321(1):29-35. doi: 10.1016/j.virol.2003.09.042.

Abstract

Sequence analysis of the L RNA genome segment and predicted encoded L polymerase protein of Crimean-Congo hemorrhagic fever (CCHF) virus (genus Nairovirus, family Bunyaviridae) demonstrates that they are approximately twice the size of those found in viruses of other bunyavirus genera. The CCHF virus L segment and encoded protein (12,164 nucleotides and 3944 amino acids, respectively) are similar in size and sequence to those of the nairovirus Dugbe virus (12,255/62% and 4036/62% nucleotide and amino acid length/identity, respectively). The identification of an ovarian tumor (OTU)-like protease motif in the L protein amino termini of the nairoviruses Dugbe, CCHF, and Nairobi sheep disease (NSD) indicates these proteins are members of the recently described OTU-like protease family and suggests that these large proteins may be polyproteins that are autoproteolytically cleaved or involved in deubiquitination.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Motifs / genetics
  • Amino Acid Sequence
  • DNA-Directed RNA Polymerases / genetics*
  • Genome, Viral*
  • Hemorrhagic Fever Virus, Crimean-Congo / chemistry
  • Hemorrhagic Fever Virus, Crimean-Congo / enzymology
  • Hemorrhagic Fever Virus, Crimean-Congo / genetics*
  • Molecular Sequence Data
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Alignment

Substances

  • DNA-Directed RNA Polymerases