Genomic structure of the ZmMADS2 gene. a, The ZmMADS2 gene consists of eight exons (E1–E8) and seven introns (I1–I7) with an unusually large second intron (I2). The transcription start point was determined using a primer extension assay. The ATG START codon is located 312 bp downstream of the transcription start point. The context sequence around the translational initiation codon ATG is typical for monocots. Intron sizes are given in base pairs above the sequence. b, ZmMADS2 belongs to the MIKC type of MADS box proteins. ZmMADS2 contains of a highly conserved MADS box at the N terminus, a linker sequence, a keratine box, and a highly variable C terminus. A putative bipartite nuclear localization signal is found inside the MADS box. Distribution of exons is shown above protein domains. c, Clustering of putative cis-acting elements and repetitive sequences upstream of the ATG START codon. Putative cis elements responsible for sugar starvation induction are displayed in green (ACGTA or AATAGAAAA), those responding to water stress and abscisic acid are displayed in blue (TAACTG and ACACNNG, respectively), putative root-specific elements are shown in red (ATATT), and sequences homologous to motifs responsible for late pollen-specific expression are given in orange (AGAAA or GTGA). Sequence repeats are shown below the horizontal bar. Yellow, Direct repeats (GTATGTAACATA... –... GTATGTAACATA in box V, AGTTATATATTTAT-AGTTATATATTTAT in box IV, and CTCAAATACGTAA... –... CTCAAATACGTAA in box III), brown, inverted repeats (TAATAATTATTA); dark orange, dyad repeats (ATTGAAAAGTTA). Arrow, Transcription start site; arrowhead, position of the start codon.