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Bioinformatics. 2004 May 22;20(8):1329-30. Epub 2004 Feb 10.

eF-site and PDBjViewer: database and viewer for protein functional sites.

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  • 1Graduate School of Integrated Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.


The electrostatic-surface of functional site (eF-site) is a database for the molecular surfaces of protein functional sites. To enable browsing of each molecular surface along with the atomic model, we have developed a new three-dimensional interactive viewer, PDBjViewer, that can be used both as an applet and as a stand-alone program.


The eF-site database and PDBjViewer are freely available from

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