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Versatile and open software for comparing large genomes.
Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146 Hamburg, Germany.
The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MUMmer to be released as open-source software. This allows other developers to contribute to the code base and freely redistribute the code. The MUMmer sources are available at http://www.tigr.org/software/mummer.
PMID: 14759262 [PubMed - indexed for MEDLINE]
PMCID: PMC395750
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Cited by over 100 PubMed Central articles
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The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).
Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, et al.
PLoS One. 2009 Jul 1; 4(7):e6085. Epub 2009 Jul 1.
[PLoS One. 2009]
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Fast statistical alignment.
Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, Dewey C, Holmes I, Pachter L.
PLoS Comput Biol. 2009 May; 5(5):e1000392. Epub 2009 May 29.
[PLoS Comput Biol. 2009]
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High-throughput genotyping by whole-genome resequencing.
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, et al.
Genome Res. 2009 Jun; 19(6):1068-76. Epub 2009 May 6.
[Genome Res. 2009]
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