Nucleic Acids Res. 2004 Jan 1;32(Database issue):D122-4.

DBSubLoc: database of protein subcellular localization.

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Institute of Bioinformatics, Department of Biological Sciences and Biotechnology, Tsinghua University, Beijing 100084, China.

Abstract

We have built a protein subcellular localization annotation database, the DBSubLoc database, which is available at http://www.bioinfo.tsinghua. edu.cn/dbsubloc.html. Annotations were taken from primary protein databases, model organism genome projects and literature texts, and then were analyzed to dig out the subcellular localization features of the proteins. The proteins are also classified into different categories. Based on sequence alignment, non-redundant subsets of the database have been built, which may provide useful information for subcellular localization prediction. The database now contains >60,000 protein sequences including approximately 30,000 protein sequences in the non-redundant data sets. Online download, search and Blast tools are also available.

PMID:: 14681374; [PubMed - indexed for MEDLINE]
PMCID:: PMC308843

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Research Support, Non-U.S. Gov't

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Proteins

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