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Bioinformatics. 2003 Dec 12;19(18):2496-7.

DnaSP, DNA polymorphism analyses by the coalescent and other methods.

Author information

  • 1Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08071 Barcelona, Spain. jrozas@ub.edu.es

Abstract

SUMMARY:

DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (approximately 5 Mb per sequence); (2) conducting a large number of coalescent-based tests by Monte Carlo computer simulations; (3) extensive analyses of the genetic differentiation and gene flow among populations; (4) analysing the evolutionary pattern of preferred and unpreferred codons; (5) generating graphical outputs for an easy visualization of results.

AVAILABILITY:

The software package, including complete documentation and examples, is freely available to academic users from: http://www.ub.es/dnasp

PMID:
14668244
[PubMed - indexed for MEDLINE]
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