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Expressionview: visualization of quantitative trait loci and gene-expression data in Ensembl.
University of Rostock, Institute of Immunology, Joachim-Jungius-Strasse 9, 18059 Rostock, Germany.
We present here a software tool for combined visualization of gene-expression data and quantitative trait loci (QTL). The application is implemented as an extension to the Ensembl project and caters for a direct transition from microarray experiments of gene or protein expression levels to the genomic context of individual genes and QTL. It supports the visualization of gene clusters and the selection of functional candidate genes in the context of research on complex traits.
PMID: 14611663 [PubMed - indexed for MEDLINE]
PMCID: PMC329133
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Cited by 2 PubMed Central articles
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Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis.
Aidinis V, Carninci P, Armaka M, Witke W, Harokopos V, Pavelka N, Koczan D, Argyropoulos C, Thwin MM, Möller S, et al.
PLoS Genet. 2005 Oct; 1(4):e48. Epub 2005 Oct 28.
[PLoS Genet. 2005]
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Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma.
Furge KA, Dykema KJ, Ho C, Chen X.
BMC Genomics. 2005 May 9; 6(1):67. Epub 2005 May 9.
[BMC Genomics. 2005]