PCR analysis of clonogenic colonies. Clonogenic colonies were cultivated from LV-transduced CD34+ cells isolated by FACS on the basis of CD34 and GFP coexpression, as described in Fig. 3. Colonies were randomly isolated by aspiration from the methycellulose medium under an inverted microscope (Leica DMIL). (A) Q-PCR analysis of high-molecular-weight DNA from clonogenic colonies arising from lentiviral vector- transduced CD34+ cells. Clonogenic colonies were identified by morphology after 12 to 14 days in culture, and DNA was processed for PCR analysis as previously described (31). DNA from cells was assayed for the presence of HTLV-1 tax/rex (nucleotides 7336 to 7495) and human β-globin sequences. The numbers of cells in each colony varied and were reflected by the β-globin signal obtained. The amplified HTLV-1 and β-globin products were 159 and 110 bp, respectively. The hematopoietic colonies were identified as follows: lanes 1 to 3, 6, 8, and 12, CFU-GM; lanes 4, 9, 10, and 13, BFU-E; and lanes 7 and 14, HPP-CFC. Colonies 1, 6, 8, and 12 were from FACS experiment 1; colonies 2, 4, 11, and 13 were from FACS experiment 2; colonies 3, 5, and 9 were from FACS experiment 3; and colonies 7, 10, and 14 were from FACS experiment 4. “Mock” represents clonogenic colonies derived from sorted CD34+ cells that were mock infected and sorted only on the basis of CD34 expression. The colony analyzed in lane 6 was scored as negative for tax/rex sequences, suggesting that this colony arose from maturation of a nontransduced CD34+ cell, which presumably contaminated the FACS-purified cell population. (B) RT-PCR analysis of RNA from clonogenic colonies. RNA was isolated from clonogenic colonies by using Trizol, and a 10-μl aliquot of RNA representing 25% of the total sample was analyzed by RT-PCR with primers 670 and 671 and a OneStep RT-PCR kit (Qiagen). “Tax1-RT” represents the sample from lane 4 assayed with heat-inactivated reverse transcriptase and was used as a negative control for this experiment. RNA extracted from 104 SLB-1 cells, an HTLV-1 transformed T-cell line, was used as a positive control (SLB). Colonies 1, 2, and 4 to 8 were CFU-GM; colonies 3, 9, and 10 were BFU-E; and colonies 11 and 12 were from HPP-CFC. Colonies 1, 4, 7, and 10 were from FACS experiment 2; colonies 2, 5, 8, and 11 were from FACS experiment 3; and colonies 3, 6, 9, and 12 were from FACS experiment 4. (C) Low-field (×20) light and fluorescent micrographs were taken of a CFU-GM arising from CD34+ cells infected with HR′CMV-GFP (GFP, top panel), HR′CMV-Tax1/GFP (Tax1, middle panel), or HR′CMV-Tax2/GFP (Tax2, bottom panel) at 14 days postplating. Note that GFP expression is generally 5- to 10-fold lower in cells infected with the bicistronic LVs than in cells infected with HR′CMV-GFP, as has previously been reported (102).