Raf phospho-serine 259 antibody and a pan phospho-specific 14-3-3 binding site antibody display high specificity for their phosphorylated targets. (A) Myc-epitope-tagged c-Raf-1 variants were immunoprecipitated from COS-7 cells expressing wild-type (lanes 1-7), S259A (lanes 8-14), or S259/621A (lanes 15-17) myc-Raf alone, or coexpressing constitutive (ca, lanes 4, 5, 11, and 12) or kinase-dead (KD, lanes 6, 7, 13, and 14) AMP kinase, treated with 100 ng/ml EGF or 100 nM calyculin A for 15 min as indicated. The resulting Raf proteins were separated with 10% SDS-PAGE and immunoblotted with either anti-myc antibody (clone 9E10, bottom), phospho-Raf S259 (top; Cell Signaling Technology) or with a pan phospho-specific 14-3-3 binding site antibody (middle; Cell Signaling Technology). The position of myc-Raf in the various blots is indicated. (B and C) Serum-deprived COS-7 cells expressing wild-type (B) or S259A (C) myc-Raf variants were metabolically labeled with 32P and stimulated with 100 ng/ml EGF for 15 min as indicated. myc-Raf proteins were immunoprecipitated with a myc-epitope tag antibody and subjected to phosphopeptide mapping as described in MATERIALS AND METHODS. Representative autoradiograms of the Raf phosphopeptide maps and a schematic representation of the phosphopeptide spots are presented. The locations of phospho-S43, -S621, and -S259 peptides are indicated. Note that the phospho-S259 spot is missing in the map of the Raf S259A mutant. The identity of the other phosphopeptide spots is unknown. (D) myc-Immunoprecipitates from vector control (lane 1), wild-type myc-Raf (lanes 2 and 4-6) or S259/621A myc Raf (lane 3)-transfected COS cells were treated with vehicle (lanes 1-3), alkaline phosphatase (CIAP, 20 U, lanes 4 and 5; Promega), or protein phosphatase 2A (UBI, PP2A, 0.5 U, lanes 6 and 7) for 30 min at 30°C. Lane 5 also included the alkaline phosphatase inhibitor PNPP (50 mM) and lane 7 the protein phosphatase inhibitor calyculin A (cal A, 10 nM). After dephosphorylation, the myc-immunoprecipitates were washed twice and analyzed as in A. Immunoblotting results with the pan phospho-specific 14-3-3 binding site antibody (top) and myc (bottom) are presented. (E) Twenty nanomoles of each synthetic peptide: Raf 613-627 (LPKINRSASEPSLHR, 613-627, lane 1), Raf 613-627 phosphopeptide phosphorylated on a site corresponding to Raf S621 (LPKINRSApSEPSLHR, pS621, lane 2), and Raf 461-486 phosphopeptide phosphorylated on two sites, corresponding to Raf S471 and T481 (AKNIIHRDMKpSNNIFLHEGLpTVKIGD, pS471/pT481, lane 3) were separated on a 17.5% SDS-PAGE and immunoblotted with the pan phospho-specific 14-3-3 binding site antibody.