Frequency of HLA-DPB1 alleles, including a novel DPB1 sequence, in the Northern Ireland population

Hum Immunol. 1992 Apr;33(4):235-42. doi: 10.1016/0198-8859(92)90330-p.

Abstract

HLA-DPB1 allele frequencies in 150 unrelated normal individuals from Northern Ireland were determined using oligonucleotide typing methods. HLA-DPB1*0401 was the most common allele in the population possessed by 75.3% of subjects, followed by DPB1*0201 (20.7%). In addition to these alleles, only HLA-DPB1*0402, -DPB1*0301, and -DPB1*0501 were present in subjects at frequencies greater than 10%. The results in this study are in broad agreement with other Caucasoid studies, but there is regional and ethnic variation in HLA-DP allele frequencies. Three DPB1 alleles were found to be in linkage disequilibrium with HLA-DR antigens determined by RFLP, namely, DPB1*0101 with DRw17 (Dw24 associated) RFLP, DPB1*0501 with DRw13-Dw19 RFLP, and DPB1*1901 with DRw13-Dw18 (Dw25 associated) RFLP. One individual revealed a novel DPB1 pattern of probe reactivity, which following DNA sequencing was found to be HLA-DPB1*2001. To assess the system used and to compare consistency of results between laboratories, 62 cell lines were oligotyped for HLA-DP. The results revealed the system described here to be extremely accurate and showed excellent agreement of HLA-DP typing results for cell lines between laboratories.

MeSH terms

  • Alleles*
  • Amino Acid Sequence
  • Base Sequence
  • Gene Frequency*
  • HLA-DP Antigens / genetics*
  • HLA-DP beta-Chains
  • Histocompatibility Testing
  • Humans
  • Lymphocyte Culture Test, Mixed
  • Molecular Sequence Data
  • Northern Ireland
  • Oligonucleotide Probes
  • Polymorphism, Genetic

Substances

  • HLA-DP Antigens
  • HLA-DP beta-Chains
  • HLA-DPB1 antigen
  • Oligonucleotide Probes

Associated data

  • GENBANK/S40828
  • GENBANK/S52910
  • GENBANK/S52911
  • GENBANK/S52912
  • GENBANK/S52913
  • GENBANK/S52914
  • GENBANK/S78409
  • GENBANK/S78411
  • GENBANK/S78413
  • GENBANK/S78753