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1: Genome Biol. 2003;4(8):R51. Epub 2003 Jul 28.Click here to read Click here to read Links

A comparative proteomics resource: proteins of Arabidopsis thaliana.

Li WW, Quinn GB, Alexandrov NN, Bourne PE, Shindyalov IN.

San Diego Supercomputer Center, 9500 Gilman Drive, University of California San Diego, La Jolla, CA 92093-0505, USA. bourne@sdsc.edu

Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel fold library that extends common domain classifications. iGAP is being applied to proteins from all available proteomes as part of a comparative proteomics resource. The database is accessible from the web.

PMID: 12914659 [PubMed - indexed for MEDLINE]

PMCID: PMC193643