Bioinformatics. 2003 May 22;19(8):1043-4.

CAP: conformation angles package-displaying the conformation angles of side chains in proteins.

Sheik SS, Sundararajan P, Shanthi V, Sekar K.

Source

Bioinformatics Centre and Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India. sekar@physics.iisc.ernet.in

Abstract

SUMMARY: A graphics package has been developed to display all side chain conformation angles of the user selected residue in a given protein structure. The proposed package is incorporated with all the protein structures (solved using X-ray diffraction and NMR spectroscopy) available in the Protein Data Bank. The package displays the multiple conformations adopted by a single amino acid residue whose structure is solved and refined at very high resolution. In addition, it shows the percentage distribution of the side chain conformation angles in different rotameric states. AVAILABILITY: http://144.16.71.146/cap/

PMID:: 12761072; [PubMed - indexed for MEDLINE]

Free full text

LinkOut - more resources

Full Text Sources

Other Literature Sources

Labome Researcher Resource - ExactAntigen/Labome

Molecular Biology Databases

L-Leucine - HSDB

Supplemental Content

Save items

Related citations in PubMed

Ramachandran plot on the web. [Bioinformatics. 2002]
Ramachandran plot on the web.
Sheik SS, Sundararajan P, Hussain AS, Sekar K. Bioinformatics. 2002 Nov; 18(11):1548-9.
CADB: Conformation Angles DataBase of proteins. [Nucleic Acids Res. 2003]
CADB: Conformation Angles DataBase of proteins.
Sheik SS, Ananthalakshmi P, Bhargavi GR, Sekar K. Nucleic Acids Res. 2003 Jan 1; 31(1):448-51.
The DynDom database of protein domain motions. [Bioinformatics. 2003]
The DynDom database of protein domain motions.
Lee RA, Razaz M, Hayward S. Bioinformatics. 2003 Jul 1; 19(10):1290-1.
Review Protein structure databases with new web services for structural biology and biomedical research. [Brief Bioinform. 2008]
Review Protein structure databases with new web services for structural biology and biomedical research.
Standley DM, Kinjo AR, Kinoshita K, Nakamura H. Brief Bioinform. 2008 Jul; 9(4):276-85. Epub 2008 Apr 22.
Review [Surface potential energy of peptides and conformation of amino acid residues in proteins. Preliminary results of processing using databank protein structures]. [Biofizika. 1995]
Review [Surface potential energy of peptides and conformation of amino acid residues in proteins. Preliminary results of processing using databank protein structures].
Basharov MA. Biofizika. 1995 Mar-Apr; 40(2):260-73.

See reviews... See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Compound (MeSH Keyword)
PubChem chemical compound records that are classified under the same Medical Subject Headings (MeSH) controlled vocabulary as the current articles.
Substance (MeSH Keyword)
PubChem chemical substance (submitted) records that are classified under the same Medical Subject Headings (MeSH) controlled vocabulary as the current articles.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

CAP: conformation angles package-displaying the conformation angles of side chai...
CAP: conformation angles package-displaying the conformation angles of side chains in proteins.
Bioinformatics. 2003 May 22 ;19(8):1043-4.

PubMed
3D-Jury: a simple approach to improve protein structure predictions.
3D-Jury: a simple approach to improve protein structure predictions.
Bioinformatics. 2003 May 22 ;19(8):1015-8.

PubMed
Prone position improves lung mechanical behavior and enhances gas exchange effic...
Prone position improves lung mechanical behavior and enhances gas exchange efficiency in mechanically ventilated chronic obstructive pulmonary disease patients.
Anesth Analg. 2003 Jun ;96(6):1756-67, table of contents.

PubMed
CT-guided transthoracic needle aspiration biopsy of small (< or = 20 mm) solitar...
CT-guided transthoracic needle aspiration biopsy of small (< or = 20 mm) solitary pulmonary nodules.
AJR Am J Roentgenol. 2003 Jun ;180(6):1665-9.

PubMed
Haemolytic anaemia due to glucose-6-phosphate dehydrogenase (G6PD) deficiency: d...
Haemolytic anaemia due to glucose-6-phosphate dehydrogenase (G6PD) deficiency: demonstration of two new biochemical variants, G6PD Hamm and G6PD Tarsus.
Br J Haematol. 1976 Jul ;33(3):363-70.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to:

CAP: conformation angles package-displaying the conformation angles of side chains in proteins.

Source

Abstract

Publication Types, MeSH Terms, Substances

Publication Types

MeSH Terms

Substances

LinkOut - more resources

Full Text Sources

Other Literature Sources

Molecular Biology Databases

Supplemental Content

Save items

Related citations in PubMed

Related information

Recent activity

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information