Identification and nucleotide sequence analysis of a cryptic plasmid, pRM21, from Rhodothermus marinus

Plasmid. 2003 Mar;49(2):188-91. doi: 10.1016/s0147-619x(02)00152-x.

Abstract

Here we report the identification and nucleotide sequence analysis of pRM21, a plasmid isolated from the thermophilic eubacterium Rhodothermus marinus. pRM21 consists of 2935 bp, has a G+C content of 58.2% and one major open reading frame whose deduced product shows significant similarities to RepA proteins from several plasmids, the highest being to the RepA of pSa from Escherichia coli. A region with the characteristics of iteron-containing replicons, three 19 bp repeats, DnaA boxes, an A+T rich region and GATC sequences, was identified. Of 40 additional R. marinus strains screened for plasmids, six (15%) were found to harbour plasmids with the same size and restriction pattern as pRM21.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • AT Rich Sequence
  • Bacteria / genetics*
  • Base Sequence
  • DNA Helicases*
  • DNA-Binding Proteins*
  • Molecular Sequence Data
  • Plasmids / genetics*
  • Proteins / genetics
  • Replicon / genetics
  • Restriction Mapping
  • Sequence Analysis, DNA
  • Trans-Activators*

Substances

  • DNA-Binding Proteins
  • Proteins
  • Trans-Activators
  • replication initiator protein
  • DNA Helicases

Associated data

  • RefSeq/NC_001755