Genome Biol. 2003;4(4):R27. Epub 2003 Mar 25.

MatchMiner: a tool for batch navigation among gene and gene product identifiers.

Bussey KJ, Kane D, Sunshine M, Narasimhan S, Nishizuka S, Reinhold WC, Zeeberg B, Ajay W, Weinstein JN.

Source

Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH Building 37, Bethesda, MD 20892-4255, USA.

Abstract

MatchMiner is a freely available program package for batch navigation among gene and gene product identifier types commonly encountered in microarray studies and other forms of 'omic' research. The user inputs a list of gene identifiers and then uses the Merge function to find the overlap with a second list of identifiers of either the same or a different type or uses the LookUp function to find corresponding identifiers.

PMID:: 12702208; [PubMed - indexed for MEDLINE]
PMCID:: PMC154578

Free PMC Article

Images from this publication.See all images (3) Free text

MeSH Terms, Substances

MeSH Terms

Substances

LinkOut - more resources

Full Text Sources

Other Literature Sources

Molecular Biology Databases

MatchMiner - Bioinformatics.ca Links Directory

Supplemental Content

Save items

Related citations in PubMed

Graphical representation of ribosomal RNA probe accessibility data using ARB software package. [BMC Bioinformatics. 2005]
Graphical representation of ribosomal RNA probe accessibility data using ARB software package.
Kumar Y, Westram R, Behrens S, Fuchs B, Glöckner FO, Amann R, Meier H, Ludwig W. BMC Bioinformatics. 2005 Mar 21; 6:61. Epub 2005 Mar 21.
MILANO--custom annotation of microarray results using automatic literature searches. [BMC Bioinformatics. 2005]
MILANO--custom annotation of microarray results using automatic literature searches.
Rubinstein R, Simon I. BMC Bioinformatics. 2005 Jan 20; 6:12. Epub 2005 Jan 20.
CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments. [BMC Bioinformatics. 2008]
CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments.
Uva P, de Rinaldis E. BMC Bioinformatics. 2008 Nov 17; 9:485. Epub 2008 Nov 17.
Review Software packages for quantitative microarray-based gene expression analysis. [Curr Pharm Biotechnol. 2003]
Review Software packages for quantitative microarray-based gene expression analysis.
Dresen IM, Hüsing J, Kruse E, Boes T, Jöckel KH. Curr Pharm Biotechnol. 2003 Dec; 4(6):417-37.
Review Microarray analysis: genome-scale hypothesis scanning. [PLoS Biol. 2003]
Review Microarray analysis: genome-scale hypothesis scanning.
Gibson G. PLoS Biol. 2003 Oct; 1(1):E15. Epub 2003 Oct 13.

See reviews... See all...

Cited by 51 PubMed Central articles

Identifier mapping performance for integrating transcriptomics and proteomics experimental results. [BMC Bioinformatics. 2011]
Identifier mapping performance for integrating transcriptomics and proteomics experimental results.
Day RS, McDade KK, Chandran UR, Lisovich A, Conrads TP, Hood BL, Kolli VS, Kirchner D, Litzi T, Maxwell GL. BMC Bioinformatics. 2011 May 27; 12:213. Epub 2011 May 27.
Microbiota modulate host gene expression via microRNAs. [PLoS One. 2011]
Microbiota modulate host gene expression via microRNAs.
Dalmasso G, Nguyen HT, Yan Y, Laroui H, Charania MA, Ayyadurai S, Sitaraman SV, Merlin D. PLoS One. 2011 Apr 29; 6(4):e19293. Epub 2011 Apr 29.
A comprehensive protein-centric ID mapping service for molecular data integration. [Bioinformatics. 2011]
A comprehensive protein-centric ID mapping service for molecular data integration.
Huang H, McGarvey PB, Suzek BE, Mazumder R, Zhang J, Chen Y, Wu CH. Bioinformatics. 2011 Apr 15; 27(8):1190-1.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
References for this PMC Article
Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
Substance (MeSH Keyword)
PubChem chemical substance (submitted) records that are classified under the same Medical Subject Headings (MeSH) controlled vocabulary as the current articles.
Free in PMC
Free full text articles in PMC
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

MatchMiner: a tool for batch navigation among gene and gene product identifiers.
MatchMiner: a tool for batch navigation among gene and gene product identifiers.
Genome Biol. 2003 ;4(4):R27. Epub 2003 Mar 25 .

PubMed
Extradural guinea-worm abscess. Report of two cases.
Extradural guinea-worm abscess. Report of two cases.
J Neurosurg. 1975 Nov ;43(5):627-30.

PubMed
Qigong practice: a pathway to health and healing.
Qigong practice: a pathway to health and healing.
Holist Nurs Pract. 2003 Mar-Apr ;17(2):110-6.

PubMed
Subcutaneous rupture of the Achilles tendon.
Subcutaneous rupture of the Achilles tendon.
Int Surg. 1976 Jan ;61(1):14-8.

PubMed
Characteristics of high-quality guidelines: evaluation of 86 clinical guidelines...
Characteristics of high-quality guidelines: evaluation of 86 clinical guidelines developed in ten European countries and Canada.
Int J Technol Assess Health Care. 2003 Winter ;19(1):148-57.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: