Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information
Bioinformatics. 2003 Feb 12;19(3):429-30.

PDP: protein domain parser.

Author information

  • 1Ceres Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA. nicka@ceres-inc.com

Abstract

We have developed a program for automatic identification of domains in protein three-dimensional structures. Performance of the program was assessed by three different benchmarks: (i) by comparison with the expert-curated SCOP database of structural domains; (ii) by comparison with a collection of manual domain assignments; and (iii) by comparison with a set of 55 proteins, frequently used as a benchmark for automatic domain assignment. In all these benchmarks PDP identified domains correctly in more than 80% of proteins.

AVAILABILITY:

http://123d.ncifcrf.gov/.

PMID:
12584135
[PubMed - indexed for MEDLINE]
Free full text
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Icon for HighWire
    Loading ...
    Write to the Help Desk