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Results: 20

1.

Summaries of Affymetrix GeneChip probe level data.

Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP.

Nucleic Acids Res. 2003 Feb 15;31(4):e15.

2.

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.

Eckel-Passow JE, Atkinson EJ, Maharjan S, Kardia SL, de Andrade M.

BMC Bioinformatics. 2011 May 31;12:220. doi: 10.1186/1471-2105-12-220.

3.

Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3' expression arrays.

Pradervand S, Paillusson A, Thomas J, Weber J, Wirapati P, Hagenbüchle O, Harshman K.

Biotechniques. 2008 May;44(6):759-62. doi: 10.2144/000112751.

4.

Interleukin-27 induces interferon-inducible genes: analysis of gene expression profiles using Affymetrix microarray and DAVID.

Imamichi T, Yang J, Huang da W, Sherman B, Lempicki RA.

Methods Mol Biol. 2012;820:25-53. doi: 10.1007/978-1-61779-439-1_3.

PMID:
22131024
5.

Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers.

Michelhaugh SK, Lipovich L, Blythe J, Jia H, Kapatos G, Bannon MJ.

J Neurochem. 2011 Feb;116(3):459-66. doi: 10.1111/j.1471-4159.2010.07126.x. Epub 2010 Dec 22.

6.

Expression Profiling Using Affymetrix GeneChip Microarrays.

Auer H, Newsom DL, Kornacker K.

Methods Mol Biol. 2009;509:35-46. doi: 10.1007/978-1-59745-372-1_3. Review.

PMID:
19212713
7.

The Affymetrix DMET platform and pharmacogenetics in drug development.

Deeken J.

Curr Opin Mol Ther. 2009 Jun;11(3):260-8. Review.

PMID:
19479659
8.

Mitochondrial genome sequence analysis: a custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy.

Xie HM, Perin JC, Schurr TG, Dulik MC, Zhadanov SI, Baur JA, King MP, Place E, Clarke C, Grauer M, Schug J, Santani A, Albano A, Kim C, Procaccio V, Hakonarson H, Gai X, Falk MJ.

BMC Bioinformatics. 2011 Oct 19;12:402. doi: 10.1186/1471-2105-12-402.

9.

The affymetrix GeneChip platform: an overview.

Dalma-Weiszhausz DD, Warrington J, Tanimoto EY, Miyada CG.

Methods Enzymol. 2006;410:3-28. Review.

PMID:
16938544
10.

Microarray profiling of DNA extracted from FFPE tissues using SNP 6.0 Affymetrix platform.

Tuefferd M, de Bondt A, Van den Wyngaert I, Talloen W, Göhlmann H.

Methods Mol Biol. 2011;724:147-60. doi: 10.1007/978-1-61779-055-3_10.

PMID:
21370012
11.

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.

Consiglio A, Carella M, De Caro G, Delle Foglie G, Giovannelli C, Grillo G, Ianigro M, Licciulli F, Palumbo O, Piepoli A, Ranieri E, Liuni S.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S21. doi: 10.1186/1471-2105-13-S4-S21.

12.

A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms.

Woo Y, Affourtit J, Daigle S, Viale A, Johnson K, Naggert J, Churchill G.

J Biomol Tech. 2004 Dec;15(4):276-84.

13.

NetAffx: Affymetrix probesets and annotations.

Liu G, Loraine AE, Shigeta R, Cline M, Cheng J, Valmeekam V, Sun S, Kulp D, Siani-Rose MA.

Nucleic Acids Res. 2003 Jan 1;31(1):82-6.

14.

affy--analysis of Affymetrix GeneChip data at the probe level.

Gautier L, Cope L, Bolstad BM, Irizarry RA.

Bioinformatics. 2004 Feb 12;20(3):307-15.

15.

Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays.

Abdueva D, Wing M, Schaub B, Triche T, Davicioni E.

J Mol Diagn. 2010 Jul;12(4):409-17. doi: 10.2353/jmoldx.2010.090155. Epub 2010 Jun 3.

16.

Array-based karyotyping for prognostic assessment in chronic lymphocytic leukemia: performance comparison of Affymetrix 10K2.0, 250K Nsp, and SNP6.0 arrays.

Hagenkord JM, Monzon FA, Kash SF, Lilleberg S, Xie Q, Kant JA.

J Mol Diagn. 2010 Mar;12(2):184-96. doi: 10.2353/jmoldx.2010.090118. Epub 2010 Jan 14.

17.

Exon array data analysis using Affymetrix power tools and R statistical software.

Lockstone HE.

Brief Bioinform. 2011 Nov;12(6):634-44. doi: 10.1093/bib/bbq086. Epub 2011 Apr 15.

18.

Algorithm implementation for CNV discovery using Affymetrix and Illumina SNP array data.

Winchester L, Ragoussis J.

Methods Mol Biol. 2012;838:291-310. doi: 10.1007/978-1-61779-507-7_14.

PMID:
22228018
19.

Application of z-score transformation to Affymetrix data.

Cheadle C, Cho-Chung YS, Becker KG, Vawter MP.

Appl Bioinformatics. 2003;2(4):209-17.

PMID:
15130792
20.

inSilicoDb: an R/Bioconductor package for accessing human Affymetrix expert-curated datasets from GEO.

Taminau J, Steenhoff D, Coletta A, Meganck S, Lazar C, de Schaetzen V, Duque R, Molter C, Bersini H, Nowé A, Weiss Solís DY.

Bioinformatics. 2011 Nov 15;27(22):3204-5. doi: 10.1093/bioinformatics/btr529. Epub 2011 Sep 21.

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