Classical and conditional knockout of CK2β. (A) Gene-targeting strategy and deletion events after Cre expression. Maps of the CK2β wild-type allele, CK2β+, the targeting vector, the CK2β3lox allele after gene targeting, and the resulting CK2β− and CK2β2lox alleles after Cre expression. Rectangles represent the seven exons of the CK2β gene. The area of the CK2β+ genomic region used for gene targeting is indicated by the thick horizontal line. loxP sites are indicated by black arrowheads. The positions of the 5′ and 3′ external probes and the internal probe used for Southern blot hybridization and the fragments detected for the different alleles are indicated above the CK2β+ allele and below the CKβ2lox allele by black bars. The positions of primers (numbered 1 to 6) for PCR analysis are indicated by arrows below the CK2β+, CK2β3lox, CK2β−, and CK2β2lox alleles. Restriction enzyme cutting sites relevant for the detection of the different alleles are marked as follows: H, HindIII; E, EcoRI; and Xh, XhoI. (B) Identification of CK2β3lox/+ ES cell clones. The correct targeting event was confirmed by the appearances of a 3.0-kb HindIII fragment after hybridization with the 5′ probe and of a 7.3-kb EcoRI fragment after hybridization with the 3′ probe, whereas the wild-type allele gave rise to 5.1- and 5.7-kb bands, respectively. The genotypes are indicated above the lanes. (C) Strategy to discriminate CK2β alleles by Southern blot hybridization (left) and PCR analysis (right). For Southern blot hybridization, genomic DNA was digested with XhoI and hybridized with the internal probe, which revealed fragments of specific sizes for the four different alleles. For PCR analysis, two of the four primers (designated 1 to 4) were used in three different combinations, as indicated below the lanes. Fragments of different sizes, depending on the alleles present, were obtained. The genotypes are indicated above the lanes. In the case of the PCR with primers 1 and 4 and the CK2β+/− genotype, competition between the 2.6- and 0.3-kb products from the CK2β+ and CK2β− alleles, respectively, led to amplification of only the small fragment specific for the CK2β− allele. Figure 4 shows the results of PCR with primers 5 and 6.