Catabolic pathway of vanillate and syringate by S. paucimobilis SYK-6 (A) and organization of the PCA 4,5-cleavage pathway genes (B). (A) LigA and LigB, the small and large subunits of 4,5-PCD (31, 44); LigH, an essential gene product for vanillate and syringate O demethylations (30); LigC, CHMS dehydrogenase (27); LigI, PDC hydrolase (28); LigJ, OMA hydratase (11); LigK, CHA aldolase/oxaloacetate (OA) decarboxylase (in this study). The degradation pathway for syringate indicated by a dashed line was suggested in our previous study (11, 27, 28). (B) orf1, orf2, ligI, ligJ, ligK, ligA, ligB, ligC, ligR, and lignostilbene α,β-dioxygenase homolog (lsdA) genes are demonstrated by the filled arrows. Vertical bars above the restriction map indicate the positions of the Kmr gene insertion of orf1 mutant (DF1), ligK mutant (DLK), ligR mutant (DLR), and orf2 mutant (DF2). Double-headed arrows indicate locations of amplified RT-PCR products shown in Fig. 5. Abbreviations for restriction enzymes: C, ClaI; E, EcoRI; Ec, Eco47III; P, PstI; Pu, PpuMI; Sh, SphI; Sl, SalI; Sm, SmaI; X, XhoI; Xb, XbaI.