Working hypothesis by Pearce and colleagues for the role of nitric oxide (NO) in mitochondrial respiration. Under normal conditions, protons (4H+) and electrons from the citric acid cycle are passed along the electron transport chain, from coenzyme Q to cytochromes b, c1, c, and a + a3 (4c2+), generating energy in the process (oxidative phosphorylation). At the end of the chain the electrons and protons combine with oxygen to form water. Cytochrome c oxidase catalyses the final transfer of electrons from cytochrome c to cytochromes a + a3 (the fast reaction shown at the bottom of the diagram). NO has a high affinity for cytochrome c oxidase, and will bind to this mitochondrial enzyme more readily than does molecular oxygen (O2). However, molecular oxygen can diffuse into the active site where the NO is bound, and may gain an electron from one of the metal ion cofactors present (the authors suggest CuB). This results in the formation of superoxide—that is, O2−. The superoxide immediately reacts with the NO, forming peroxynitrite, which then further oxidises the metal ion cofactor to produce water and nitrite ion. Because all intermediates are enzyme associated, no superoxide or peroxynitrite is released into free solution. Thus, under normal physiological conditions, cytochrome c oxidase suppresses peroxynitrite formation by scavenging available NO and preventing it from reacting with superoxide in free solution (the slow reaction shown on the right of the diagram). Because the overall reaction is slow, and the affinity of NO for cytochrome oxidase is high, normal mitochondrial respiration is inhibited. Although this interpretation of the mitochondrial/NO interaction is intriguing, other proposed inhibitory reaction cycles (for example, mechanisms described in: Torres and colleagues64 and Guiffre and colleagues65) are at least equally plausible. Indeed, there may be more than one mechanism operative, depending on whether NO or O2 is the first to enter the active site (reproduced with the kind permission of the authors and the American Society for Chemistry and Molecular Biology).63