Effect of peptides on affinity purification of p36 with GST-p11 and competitive binding between NS3 and p36 for immobilized p11. (A) Affinity purification of baculovirus-expressed p36 with immobilized GST-p11 in the presence of NS3 and p36 peptides. Lanes: 1, Ns1–14; 2, Ns10–24; 3, Ns20–34; 4, Ac1–14. (B) Effect of increasing levels of Ns1–14 and Ac1–14 peptide concentrations on p36 affinity purification. Lanes: 1 and 6, no peptide; 2–5, 1 μg/ml, 10 μg/ml, 100 μg/ml, and 1 mg/ml of Ac1–14, respectively; 7–10, 1 μg/ml, 10 μg/ml, 100 μg/ml, and 1 mg/ml of Ns1–14, respectively. (C) Competition between p36 and NS3 for p11. Lanes: 1–5, a constant NS3 concentration bound to p11 was incubated with increasing amounts of p36; 6–10, increasing concentrations of NS3 were used to compete out a constant amount of p36 from the immobilized p11. The ratios of the proteins in competitive binding assays were approximately (in order) 1:0.5, 1:0.75, 1:1, 1:1.5, and 1:2.