Bioinformatics. 2002 Sep;18(9):1278-9.

Applications of Tree-Maps to hierarchical biological data.

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Duke Bioinformatics Shared Resource, Duke University Medical Center, Durham NC 27710, USA. mccon012@mc.duke.edu

Abstract

A brief overview of Tree-Maps provides the basis for understanding two new implementations of Tree-Map methods. TreeMapClusterView provides a new way to view microarray gene expression data, and GenePlacer provides a view of gene ontology annotation data. We also discuss the benefits of Tree-Maps to visualize complex hierarchies in functional genomics. AVAILABILITY: Java class files are freely available at http://mendel.mc.duke.edu/bioinformatics/ CONTACT: mccon012@mc.duke.edu SUPPLEMENTARY INFORMATION: For more information on TreeMapClusterView (see http://mendel.mc.duke.edu/bioinformatics/software/boxclusterview/), and http://mendel.mc.duke.edu/bioinformatics/software/geneplacer/).

PMID:: 12217926; [PubMed - indexed for MEDLINE]

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