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Genome Biol. 2002 Jun 24;3(7):SOFTWARE0002. Epub 2002 Jun 24.

CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.

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Department of Medicine, Baylor College of Medicine, One Baylor Plaza, ST-924, Houston, Texas 77030, USA. peterson@bcm.tmc.edu

Abstract

CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

PMID:: 12184816; [PubMed - indexed for MEDLINE]
PMCID:: PMC139388

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Publication Types, MeSH Terms, Grant Support

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Research Support, U.S. Gov't, P.H.S.

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Grant Support

CA-78199-04/CA/NCI NIH HHS/United States

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