Equilibrium shapes of flat knots

Phys Rev Lett. 2002 May 6;88(18):188101. doi: 10.1103/PhysRevLett.88.188101. Epub 2002 Apr 19.

Abstract

We study the equilibrium shapes of prime and composite knots confined to two dimensions. Using scaling arguments we show that, due to self-avoiding effects, the topological details of prime knots are localized on a small portion of the larger ring polymer. Within this region, the original knot configuration can assume a hierarchy of contracted shapes, the dominating one given by just one small loop. This hierarchy is investigated in detail for the flat trefoil knot, and corroborated by Monte Carlo simulations.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • DNA / chemistry
  • Kinetics
  • Models, Chemical*
  • Molecular Conformation
  • Nucleic Acid Conformation
  • Polymers / chemistry*

Substances

  • Polymers
  • DNA