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Genome Biol. 2002;3(2):RESEARCH0009. Epub 2002 Jan 29.

Model-based cluster analysis of microarray gene-expression data.

Author information

  • 1Division of Biostatistics, School of Public Health, University of Minnesota, 420 Delaware Street SE, Minneapolis, MN 55455-0378, USA. weip@biostat.umn.edu

Abstract

BACKGROUND:

Microarray technologies are emerging as a promising tool for genomic studies. The challenge now is how to analyze the resulting large amounts of data. Clustering techniques have been widely applied in analyzing microarray gene-expression data. However, normal mixture model-based cluster analysis has not been widely used for such data, although it has a solid probabilistic foundation. Here, we introduce and illustrate its use in detecting differentially expressed genes. In particular, we do not cluster gene-expression patterns but a summary statistic, the t-statistic.

RESULTS:

The method is applied to a data set containing expression levels of 1,176 genes of rats with and without pneumococcal middle-ear infection. Three clusters were found, two of which contain more than 95% genes with almost no altered gene-expression levels, whereas the third one has 30 genes with more or less differential gene-expression levels.

CONCLUSIONS:

Our results indicate that model-based clustering of t-statistics (and possibly other summary statistics) can be a useful statistical tool to exploit differential gene expression for microarray data.

PMID:
11864371
[PubMed - indexed for MEDLINE]
PMCID:
PMC65687
Free PMC Article

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