Deciphering genetic regulatory code... [Proc Natl Acad Sci U S A. 2002] - PubMed

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Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. [Genome Res. 2002]
Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers.
Papatsenko DA, Makeev VJ, Lifanov AP, Régnier M, Nazina AG, Desplan C. Genome Res. 2002 Mar; 12(3):470-81.
ChIPs and regulatory bits. [Nat Biotechnol. 2010]
ChIPs and regulatory bits.
He X, Sinha S. Nat Biotechnol. 2010 Feb; 28(2):142-3.
Review Decoding cis-regulatory DNAs in the Drosophila genome. [Curr Opin Genet Dev. 2002]
Review Decoding cis-regulatory DNAs in the Drosophila genome.
Markstein M, Levine M. Curr Opin Genet Dev. 2002 Oct; 12(5):601-6.
Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes. [Mol Biol Evol. 2004]
Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.
Phinchongsakuldit J, MacArthur S, Brookfield JF. Mol Biol Evol. 2004 Feb; 21(2):348-63. Epub 2003 Dec 5.
Review One thousand and one ways of making functionally similar transcriptional enhancers. [Bioessays. 2008]
Review One thousand and one ways of making functionally similar transcriptional enhancers.
Veitia RA. Bioessays. 2008 Nov; 30(11-12):1052-7.

A high resolution genome-wide scan of HNF4α recognition sites infers a regulatory gene network in colon cancer. [PLoS One. 2011]
A high resolution genome-wide scan of HNF4α recognition sites infers a regulatory gene network in colon cancer.
Weltmeier F, Borlak J. PLoS One. 2011; 6(7):e21667. Epub 2011 Jul 28.
Application of Biostatistics and Bioinformatics Tools to Identify Putative Transcription Factor-Gene Regulatory Network of Ankylosing Spondylitis and Sarcoidosis. [Commun Stat Theory Methods. 2009]
Application of Biostatistics and Bioinformatics Tools to Identify Putative Transcription Factor-Gene Regulatory Network of Ankylosing Spondylitis and Sarcoidosis.
Choi D, Sharma SM, Pasadhika S, Kang Z, Harrington CA, Smith JR, Planck SR, Rosenbaum JT. Commun Stat Theory Methods. 2009 Jan 1; 38(18):3326-3338.
Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila. [PLoS Genet. 2009]
Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.
Ho MC, Johnsen H, Goetz SE, Schiller BJ, Bae E, Tran DA, Shur AS, Allen JM, Rau C, Bender W, et al. PLoS Genet. 2009 Nov; 5(11):e1000709. Epub 2009 Nov 6.

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