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Bioinformatics. 2001 Dec;17(12):1236-7.

ProPred: prediction of HLA-DR binding sites.

Author information

  • 1Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh-160036, India.

Abstract

ProPred is a graphical web tool for predicting MHC class II binding regions in antigenic protein sequences. The server implement matrix based prediction algorithm, employing amino-acid/position coefficient table deduced from literature. The predicted binders can be visualized either as peaks in graphical interface or as colored residues in HTML interface. This server might be a useful tool in locating the promiscuous binding regions that can bind to several HLA-DR alleles.

AVAILABILITY:

The server is available at http://www.imtech.res.in/raghava/propred/

CONTACT:

raghava@imtech.res.in

SUPPLEMENTARY INFORMATION:

http://www.imtech.res.in/raghava/propred/page3.html

PMID:
11751237
[PubMed - indexed for MEDLINE]
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