Structural comparison of chain reversal regions from HTLV-1 gp21(354–416) (Protein Data Bank [PDB] accession number 1MG1) (32) (A) and HIV-1 gp41 (559–644) modeled on the SIVMAC gp41 crystal structure (PDB accession number IQBZ) (60) (B). The structures have been aligned according to the hydrophobic 4-3 repeat sequences of the coiled-coil-forming helices. Coiled-coil-forming helices and C-terminal helices are shown as ribbons colored pink and light blue, respectively, while the rest of the chain is colored grey. The disulfide-bonded loop of gp21 is colored yellow. The region of gp41 that would comprise the disulfide-bonded loop is also shown in yellow. The side chains of residues mutated in this study of gp41 and in a previous study of gp21 (36) are indicated, as are the side chains of some residues interacting with the mutated amino acids. The HIV-1HXB2R gp160 numbering system is used for gp41. To convert to HIV-1BH8 numbering, subtract 5; to convert to SIVMAC numbering, add 13. These panels were prepared using RIBBONS 2.8 software. (C) Structure-based sequence comparison of the chain reversal/disulfide-bonded loop region from HTLV-1 gp21 (residues 374 to 415), MuLV p15E (536 to 581), Ebola virus (Zaire) GP2 (582 to 628), and selected primate lentivirus TM proteins (corresponding to HIV-1 gp41 residues 579 to 644). The lentiviruses used in the alignment include HIV-1BH8 (group M, GenBank accession number K02011), HIV-1YBF30 (group N, AJ006022), SIVCPZGAB (X52154), HIV-1ANT70 (group O, L20587), SIVMAC239 (M33262), SIVMND (S28084), SIVAGMTAN (U58991), and SIVSYK (AAA74712). α-helical regions as observed in the crystal structures of HTLV-1 gp21, HIV-1HXB2R, and SIVMAC gp41 are shown as cylinders (coiled-coil region, pink; C-terminal helix, light blue). The HIV-1HXB2R gp160 numbering system is used for the lentiviral gp41 sequences. Residues identical to those of HIV-1BH8 are highlighted in black; homologous residues are grey. Basic residues in the coiled coil and disulfide-bonded loop are highlighted in blue, and acidic residues are red. The hydrophobic clusters of gp21, p15E, and GP2 are highlighted in green, conserved glycines are dark grey, and the conserved aromatic residue C terminal to the disulfide bridge is light green. Deletions are indicated by dots. The gp41 residues mutated in this study are indicated by asterisks. As a guide, some HTLV-1 gp21 and HIV-1 gp41 residues are numbered.