Science. 2000 Nov 3;290(5493):972-7.

A kingdom-level phylogeny of eukaryotes based on combined protein data.

Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF.

Source

Department of Biology, University of York, Heslington, York, YO10 5DD, UK. slb14@york.ac.uk

Abstract

Current understanding of the higher order systematics of eukaryotes relies largely on analyses of the small ribosomal subunit RNA (SSU rRNA). Independent testing of these results is still limited. We have combined the sequences of four of the most broadly taxonomically sampled proteins available to create a roughly parallel data set to that of SSU rRNA. The resulting phylogenetic tree shows a number of striking differences from SSU rRNA phylogeny, including strong support for most major groups and several major supergroups.

PMID:: 11062127; [PubMed - indexed for MEDLINE]

Free full text

LinkOut - more resources

Full Text Sources

Other Literature Sources

Supplemental Content

Save items

Related citations in PubMed

Phylogeny of the Centrohelida inferred from SSU rRNA, tubulins, and actin genes. [J Mol Evol. 2005]
Phylogeny of the Centrohelida inferred from SSU rRNA, tubulins, and actin genes.
Sakaguchi M, Nakayama T, Hashimoto T, Inouye I. J Mol Evol. 2005 Dec; 61(6):765-75. Epub 2005 Oct 6.
An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances. [J Mol Evol. 2000]
An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances.
Van de Peer Y, Baldauf SL, Doolittle WF, Meyer A. J Mol Evol. 2000 Dec; 51(6):565-76.
Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions. [Proc Biol Sci. 2000]
Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions.
Philippe H, Lopez P, Brinkmann H, Budin K, Germot A, Laurent J, Moreira D, Müller M, Le Guyader H. Proc Biol Sci. 2000 Jun 22; 267(1449):1213-21.
Review The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation. [Philos Trans R Soc Lond B Biol...]
Review The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation.
Roger AJ, Hug LA. Philos Trans R Soc Lond B Biol Sci. 2006 Jun 29; 361(1470):1039-54.
Review Molecular evolution inferred from small subunit rRNA sequences: what does it tell us about phylogenetic relationships and taxonomy of the parabasalids? [Parasite. 1999]
Review Molecular evolution inferred from small subunit rRNA sequences: what does it tell us about phylogenetic relationships and taxonomy of the parabasalids?
Viscogliosi E, Edgcomb VP, Gerbod D, Noël C, Delgado-Viscogliosi P. Parasite. 1999 Dec; 6(4):279-91.

See reviews... See all...

Cited by over 100 PubMed Central articles

Hormonal regulation in green plant lineage families. [Physiol Mol Biol Plants. 2008]
Hormonal regulation in green plant lineage families.
Johri MM. Physiol Mol Biol Plants. 2008 Apr; 14(1-2):23-38. Epub 2008 Jun 15.
Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq. [PLoS Comput Biol. 2013]
Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq.
Franzén O, Jerlström-Hultqvist J, Einarsson E, Ankarklev J, Ferella M, Andersson B, Svärd SG. PLoS Comput Biol. 2013 Mar; 9(3):e1003000. Epub 2013 Mar 28.
RNA-seq-based metatranscriptomic and microscopic investigation reveals novel metalloproteases of Neobodo sp. as potential virulence factors for soft tunic syndrome in Halocynthia roretzi. [PLoS One. 2012]
RNA-seq-based metatranscriptomic and microscopic investigation reveals novel metalloproteases of Neobodo sp. as potential virulence factors for soft tunic syndrome in Halocynthia roretzi.
Jang HB, Kim YK, Del Castillo CS, Nho SW, Cha IS, Park SB, Ha MA, Hikima J, Hong SJ, Aoki T, et al. PLoS One. 2012; 7(12):e52379. Epub 2012 Dec 27.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Nucleotide
Primary database (GenBank) nucleotide records reported in the current articles as well as Reference Sequences (RefSeqs) that include the articles as references.
Substance (MeSH Keyword)
PubChem chemical substance (submitted) records that are classified under the same Medical Subject Headings (MeSH) controlled vocabulary as the current articles.
Taxonomy via GenBank
Taxonomy records associated with the current articles through taxonomic information on related molecular database records (Nucleotide, Protein, Gene, SNP, Structure).
Protein
Protein translation features of primary database (GenBank) nucleotide records reported in the current articles as well as Reference Sequences (RefSeqs) that include the articles as references.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.
Cited in Books
NCBI Bookshelf books that cite the current articles.

Recent activity

Clear Turn Off Turn On

A kingdom-level phylogeny of eukaryotes based on combined protein data.
A kingdom-level phylogeny of eukaryotes based on combined protein data.
Science. 2000 Nov 3 ;290(5493):972-7.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to:

A kingdom-level phylogeny of eukaryotes based on combined protein data.

Source

Abstract

Publication Types, MeSH Terms, Substances

Publication Types

MeSH Terms

Substances

LinkOut - more resources

Full Text Sources

Other Literature Sources

Supplemental Content

Save items

Related citations in PubMed

Cited by over 100 PubMed Central articles

Related information

Recent activity

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information