The use of primed synthesis by DNA polymerase I to study an intercistronic sequence of phiX-174 DNA

Eur J Biochem. 1975 Oct 15;58(2):383-95. doi: 10.1111/j.1432-1033.1975.tb02385.x.

Abstract

A decadeoxynucleotide complementary to ten nucleotides in the major ribosome-protected fragment of phiX-174 plus-strand DNA has been chemically synthesized and used as a primer for DNA polymerase I on phiX-174 plus-strand DNA as template. The sequence of the first 40 nucleotides incorporated onto the decadeoxynucleotide has been determined. This sequence extends further the sequence of the intercistronic region preceding gene G and shows the presence of another termination codon. The sequence was determined by using manganese as the activating cation for DNA polymerase I which allows ribonucleotides to be incorporated as well as deoxyribonucleotides. The ribo-substituted product was then cleaved specifically at the ribonucleotide residues to generate a series of overlapping ribo-terminated fragments whose sequences were sufficient to determine the complete sequence of the first 40 nucleotides. No evidence for misincorporation by DNA polymerase I in the presence of manganese was detected.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Base Sequence
  • Coliphages / metabolism*
  • Cytosine Nucleotides / metabolism
  • DNA Nucleotidyltransferases / metabolism*
  • DNA, Viral / biosynthesis*
  • Escherichia coli / enzymology
  • Guanosine Triphosphate / metabolism
  • Manganese / pharmacology
  • Oligonucleotides / chemical synthesis
  • Templates, Genetic
  • Thymine Nucleotides / metabolism

Substances

  • Cytosine Nucleotides
  • DNA, Viral
  • Oligonucleotides
  • Thymine Nucleotides
  • Manganese
  • Guanosine Triphosphate
  • Adenosine Triphosphate
  • DNA Nucleotidyltransferases