Amino acid alignment of four highly conserved DNA Pol protein regions. Taxon names are color coded according to clade as in Fig. 3 and are labeled A0 to L5 according to the branch tips therein. Gaps inserted to improve the alignment are indicated by a dash (—). Amino acids are color coded according to side group properties using the following scheme: red, negatively charged (D or E); orange, positively charged (H, K, or R); light green, amide (N or Q); blue, alcohol (S or T); purple, aliphatic (L, I, or V); gray, aromatic (F, Y, or W); brown, small (A or G); dark green, sulfur-containing (M or C); white, proline (P). Abbreviations: Hu, human; VZV, varicella-zoster virus; HSV, herpes simplex virus; cytomeg., cytomegalovirus; HHV, human herpesvirus.