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EMBO J. 2000 Jul 3;19(13):3418-27.

A ring-opening mechanism for DNA binding in the central channel of the T7 helicase-primase protein.

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  • 1Department of Biochemistry, Robert Wood Johnson Medical School, Piscataway, NJ 08854-5635, USA.

Abstract

We have investigated the mechanism of binding single-stranded DNA (ssDNA) into the central channel of the ring-shaped T7 gp4A' helicase-primase hexamer. Presteady-state kinetic studies show a facilitated five-step mechanism and provide understanding of how a ring-shaped helicase can be loaded on the DNA during the initiation of replication. The effect of a primase recognition sequence on the observed kinetics suggests that binding to the helicase DNA-binding site is facilitated by transient binding to the primase DNA-binding site, which is proposed to be a loading site. The proposed model involves the fast initial binding of the DNA to the primase site on the outside of the helicase ring, a fast conformational change, a ring-opening step, migration of the DNA into the central channel of the helicase ring, and ring closure. Although an intermediate protein-DNA complex is kinetically stable, only the last species in the five-step mechanism is poised to function as a helicase at the unwinding junction.

PMID:
10880454
[PubMed - indexed for MEDLINE]
PMCID:
PMC313936
Free PMC Article

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