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    Science. 2000 Jun 9;288(5472):1789-96.

    Timing the ancestor of the HIV-1 pandemic strains.

    Source

    Los Alamos National Laboratory, Los Alamos, NM 87545, USA.

    Abstract

    HIV-1 sequences were analyzed to estimate the timing of the ancestral sequence of the main group of HIV-1, the strains responsible for the AIDS pandemic. Using parallel supercomputers and assuming a constant rate of evolution, we applied maximum-likelihood phylogenetic methods to unprecedented amounts of data for this calculation. We validated our approach by correctly estimating the timing of two historically documented points. Using a comprehensive full-length envelope sequence alignment, we estimated the date of the last common ancestor of the main group of HIV-1 to be 1931 (1915-41). Analysis of a gag gene alignment, subregions of envelope including additional sequences, and a method that relaxed the assumption of a strict molecular clock also supported these results.

    Comment in

    PMID:
    10846155
    [PubMed - indexed for MEDLINE]
    Free full text

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