Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family

AIDS Res Hum Retroviruses. 2000 May 20;16(8):731-40. doi: 10.1089/088922200308738.

Abstract

Some genomic elements of the multicopy HERV-W endogenous retroviral family have been previously identified in databases. One of them, located on chromosome 7, contains a single complete open reading frame (ORF) putatively encoding an envelope protein. We have experimentally investigated the genomic complexity and coding capacity of the HERV-W family. The human haploid genome contains at least 70, 100, and 30 HERV-W-related gag, pro, and env regions, respectively, widely and heterogeneously dispersed among chromosomes. Using in vitro transcription-translation procedures, three putative HERV-W gag, pro, and env ORFs were detected on chromosomes 3, 6, and 7, respectively, and their sequences analyzed. A 363 amino acid gag ORF containing matrix and carboxy-terminal truncated capsid domains encoded a putative 45-kDa protein. No gag-pro ORF was found, but a pro sequence containing a DTG active site was detected. Finally, the previously described 538 amino acid HERV-W env ORF, located on chromosome 7, was shown to be unique and encoded a putative 80-kDa glycosylated protein. Proteins of molecular mass identical to the one obtained by an in vitro transcription-translation procedure were detected in human placenta, using anti HERV-W Gag- and Env-specific antibodies. The absence of an HERV-W replication-competent provirus versus the existence of HERV-W-related Gag and Env proteins in healthy human placenta is discussed with respect to particle formation, physiology, and pathology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Blotting, Southern
  • Chromosome Mapping*
  • Chromosomes, Human, Pair 3 / genetics
  • Chromosomes, Human, Pair 6 / genetics
  • Chromosomes, Human, Pair 7 / genetics
  • Endogenous Retroviruses / genetics*
  • Endogenous Retroviruses / metabolism*
  • Endopeptidases / genetics
  • Gene Products, env / chemistry
  • Gene Products, env / genetics
  • Genes, Viral
  • Genes, env / genetics
  • Genes, gag / genetics
  • Humans
  • Molecular Sequence Data
  • Placenta / metabolism
  • Polymerase Chain Reaction

Substances

  • Gene Products, env
  • Endopeptidases

Associated data

  • GENBANK/AF156961
  • GENBANK/AF156962
  • GENBANK/AF156963