Res Microbiol. 1999 Nov-Dec;150(9-10):653-64.

Novel intergenic repeats of Escherichia coli K-12.

Source

Department of Biochemistry and Molecular Biology, University of Miami School of Medicine, FL 33101-6129, USA. rudd@molbio.med.miami.edu

Abstract

An online catalog of intergenic DNA repeat sequence elements is added to the EcoGene Escherichia coli K-12 genome sequence annotation and analysis project (bmb.med.miami.edu/EcoGene). A library of noncoding (intergenic) DNA sequences depleted of known intergenic repeat classes was searched for DNA sequence similarities to identify novel DNA repeat sequence classes.

PMID:: 10673004; [PubMed - indexed for MEDLINE]

Publication Types, MeSH Terms, Substances

Publication Types

MeSH Terms

Substances

LinkOut - more resources

Full Text Sources

Other Literature Sources

Supplemental Content

Save items

Related citations in PubMed

Retron-Ec107 is inserted into the Escherichia coli genome by replacing a palindromic 34bp intergenic sequence. [Mol Microbiol. 1992]
Retron-Ec107 is inserted into the Escherichia coli genome by replacing a palindromic 34bp intergenic sequence.
Herzer PJ, Inouye S, Inouye M. Mol Microbiol. 1992 Feb; 6(3):345-54.
ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. [Mol Microbiol. 1991]
ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria.
Hulton CS, Higgins CF, Sharp PM. Mol Microbiol. 1991 Apr; 5(4):825-34.
Review Short palindromic repetitive DNA elements in enterobacteria: a survey. [Res Microbiol. 1999]
Review Short palindromic repetitive DNA elements in enterobacteria: a survey.
Bachellier S, Clément JM, Hofnung M. Res Microbiol. 1999 Nov-Dec; 150(9-10):627-39.
A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes. [Nucleic Acids Res. 1990]
A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes.
Sharples GJ, Lloyd RG. Nucleic Acids Res. 1990 Nov 25; 18(22):6503-8.
Review [E. coli genome project]. [Tanpakushitsu Kakusan Koso. 1997]
Review [E. coli genome project].
Mori H, Horiuchi T. Tanpakushitsu Kakusan Koso. 1997 Dec; 42(17 Suppl):2938-45.

See reviews... See all...

Cited by 14 PubMed Central articles

EcoGene 3.0. [Nucleic Acids Res. 2013]
EcoGene 3.0.
Zhou J, Rudd KE. Nucleic Acids Res. 2013 Jan; 41(Database issue):D613-24. Epub 2012 Nov 28.
DnaJ (Hsp40 protein) binding to folded substrate impacts KplE1 prophage excision efficiency. [J Biol Chem. 2012]
DnaJ (Hsp40 protein) binding to folded substrate impacts KplE1 prophage excision efficiency.
Puvirajesinghe TM, Elantak L, Lignon S, Franche N, Ilbert M, Ansaldi M. J Biol Chem. 2012 Apr 20; 287(17):14169-77. Epub 2012 Feb 28.
De novo computational prediction of non-coding RNA genes in prokaryotic genomes. [Bioinformatics. 2009]
De novo computational prediction of non-coding RNA genes in prokaryotic genomes.
Tran TT, Zhou F, Marshburn S, Stead M, Kushner SR, Xu Y. Bioinformatics. 2009 Nov 15; 25(22):2897-905. Epub 2009 Sep 10.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Gene
Gene records that cite the current articles. Citations in Gene are added manually by NCBI or imported from outside public resources.
Nucleotide (Weighted)
Nucleotide records associated with the current articles through the Gene database. These are the related sequences on the Gene record that are added manually by NCBI.
Protein (RefSeq)
NCBI protein Reference Sequences (RefSeqs) that are cited in the current articles, included in the corresponding Gene Reference into Function, or that include the PubMed articles as references.
Protein (Weighted)
Protein records associated with the current articles through related Gene database records. These are the related sequences on the Gene record that are added manually by NCBI.
Protein Clusters
Clusters of related proteins from the Protein Clusters database that cite the current articles. Sources of references in Protein Clusters include the associated Gene and Conserved Domain records as well as NCBI added citations.
Taxonomy via GenBank
Taxonomy records associated with the current articles through taxonomic information on related molecular database records (Nucleotide, Protein, Gene, SNP, Structure).
GEO Profiles
Gene Expression Omnibus (GEO) Profiles of molecular abundance data. The current articles are references on the Gene record associated with the GEO profile.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

Novel intergenic repeats of Escherichia coli K-12.
Novel intergenic repeats of Escherichia coli K-12.
Res Microbiol. 1999 Nov-Dec ;150(9-10):653-64.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: