Limited diversity of peptides related to an alloreactive T cell epitope in the HLA-B27-bound peptide repertoire results from restrictions at multiple steps along the processing-loading pathway

J Immunol. 2000 Jan 1;164(1):329-37. doi: 10.4049/jimmunol.164.1.329.

Abstract

The influence of various factors along the processing-loading pathway in limiting the diversity of HLA-B27-bound peptides around a core protein sequence was analyzed. The C5 proteasome subunit-derived RRFFPYYV and RRFFPYYVY peptides are natural B*2705 ligands. The octamer is an allospecific CTL epitope. Digestion of a 27-mer fragment of C5 revealed that both ligands are generated from this precursor substrate with the 20S proteasome in vitro in a ratio comparable to that in the B*2705-bound peptide pool. The C5 sequence allowed to derive a nested set of six additional peptides with 8-11 residues containing the core octamer sequence and the Arg2 motif of HLA-B27, none of which was found in the B27-bound pool. Together, low proteasomal yield, disfavored TAP-binding motifs, and low affinity for B*2705 accounted for the absence of four of the six peptides. The two remaining differed from the natural octamer or nonamer ligands only by an additional N-terminal Ser residue. Their stability in complex with B*2705 was lower than the respective natural ligands, raising the possibility that N-terminal trimming might have favored a shift toward the more stable peptides. The results suggest that the B*2705-bound peptide repertoire has a highly restricted diversity around a core alloantigenic sequence. This is not explained by a single bottleneck feature, but by multiple factors, including proteasomal generation, TAP-binding motifs, MHC-binding efficiency, and perhaps optimized stability through N-terminal trimming. Tapasin-dependent restrictions, although not excluded, were not required to explain the absence in vivo of the particular peptide set in this study.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Antigen Presentation / immunology*
  • Cell Line
  • Clone Cells
  • Cysteine Endopeptidases / metabolism
  • Cysteine Endopeptidases / physiology
  • Epitopes, T-Lymphocyte / immunology
  • Epitopes, T-Lymphocyte / metabolism*
  • HLA-B27 Antigen / genetics
  • HLA-B27 Antigen / immunology
  • HLA-B27 Antigen / metabolism*
  • Humans
  • Isoantigens / immunology*
  • Ligands
  • Macromolecular Substances
  • Molecular Sequence Data
  • Multienzyme Complexes / metabolism
  • Multienzyme Complexes / physiology
  • Oligopeptides / immunology*
  • Oligopeptides / metabolism*
  • Proteasome Endopeptidase Complex
  • Protein Binding / immunology
  • T-Lymphocytes, Cytotoxic / enzymology
  • T-Lymphocytes, Cytotoxic / immunology
  • T-Lymphocytes, Cytotoxic / metabolism
  • Transfection

Substances

  • Epitopes, T-Lymphocyte
  • HLA-B27 Antigen
  • Isoantigens
  • Ligands
  • Macromolecular Substances
  • Multienzyme Complexes
  • Oligopeptides
  • Cysteine Endopeptidases
  • Proteasome Endopeptidase Complex