Requirement of Mis12 for maintaining the inner centromere. (A, top) Organization of the cen1 is schematized (Takahashi et al. 1992). Probes used for PCR primers and Southern hybridization are indicated by vertical and horizontal bars, respectively. (Bottom) Cells expressing the Mis12–HA by the integrated gene were immunoprecipitated after fixation with formaldehyde and glass bead breakage. Coprecipitated DNA was amplified by PCR with the primers of cnt1, imr1, otr2 (dh), and lys1 (Saitoh et al. 1997). These primer sequences (indicated by the vertical bars) were unique or repeated up to three times in the genome. Approximately the same level of PCR-made DNAs was obtained as control from the strain expressing Mis12–HA and the wild-type 972 (lanes 4,5). Precipitates of anti-HA yielded the PCR products of cnt1 and imr1 but not of otr2 or lys1 (lane 1). Lanes 2 and 3 are the control with beads alone or the wild-type 972 extract, respectively. (B) S. pombe cells expressing Mis12–HA and Mis6–Myc were immunoprecipitated by anti-HA antibody, and the materials precipitated (Ppt) and supernatant (Sup) were immunoblotted with anti-HA and anti-Myc antibodies. Mis6–Myc was not present in the precipitates. (C) mis12-537 mutant expressing the integrated Mis6–HA (lanes 2,5) and mis6-302 expressing Mis12–HA (lanes 8,11) were constructed, and their formaldehyde-fixed extracts were immunoprecipitated by anti-HA antibody. Lanes 1–3 and 7–9 are the PCR products after immunoprecipitation; lanes 4-6 and 10-12 are the PCR products from the whole extracts. Wild-type-expressing Mis6–HA (lanes 1,4), Mis12–HA (lanes 7,10), and the wild-type 972 without the HA tag (lanes 3,6,9,12) were used as control. Mis6–HA could bind to the inner centromere regions (cnt1 and imr1) in mis12 at 36°C, and vice versa. (D) Nuclear chromatin was prepared from wild-type and the mis12 mutant cultured at 36°C for 8 hr, and digested with micrococcal nuclease for 1, 2, 4, and 8 min, followed by agarose gel electrophoresis and Southern hybridization with the three DNA probes, otr1, imr1, and cnt1 (Saitoh et al. 1997). The ethidium-bromide staining patterns are shown at right with the size markers. The smeared nucleosome pattern in the inner centromere was abolished in mis12 mutant.