Bioinformatics. 1999 Jan;15(1):87-8.

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Institut de Génétique et de Biologie Moleculaire et Cellulaire (CNRS/INSERM/ULP), BP 163, 67404 Illkirch Cedex, France. julie@igbmc.u-strasbg.fr

SUMMARY: BAliBASE is a database of manually refined multiple sequence alignments categorized by core blocks of conservation sequence length, similarity, and the presence of insertions and N/C-terminal extensions. AVAILABILITY: From http://www-igbmc. u-strasbg.fr/BioInfo/BAliBASE/index.html

PMID: 10068696 [PubMed - indexed for MEDLINE]

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BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.
Nucleic Acids Res. 2001 Jan 1; 29(1):323-6.

[Nucleic Acids Res. 2001]
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Proteins. 2005 Oct 1; 61(1):127-36.

[Proteins. 2005]
RASCAL: rapid scanning and correction of multiple sequence alignments.
Bioinformatics. 2003 Jun 12; 19(9):1155-61.

[Bioinformatics. 2003]
Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.
Bioinformatics. 2001 Aug; 17(8):713-20.

[Bioinformatics. 2001]
GOAnno: GO annotation based on multiple alignment.
Bioinformatics. 2005 May 1; 21(9):2095-6. Epub 2005 Jan 12.

[Bioinformatics. 2005]
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Fourty G, Callebaut I, Mornon JP. Bioinform Biol Insights. 2008 Jan 31; 2:47-66. Epub 2008 Jan 31.

[Bioinform Biol Insights. 2008]
Upcoming challenges for multiple sequence alignment methods in the high-throughput era.
Kemena C, Notredame C. Bioinformatics. 2009 Oct 1; 25(19):2455-65. Epub 2009 Jul 30.

[Bioinformatics. 2009]
The value of avian genomics to the conservation of wildlife.
Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EM, Otten CA, Renner T, Jones KC, et al. BMC Genomics. 2009 Jul 14; 10 Suppl 2:S10. Epub 2009 Jul 14.

[BMC Genomics. 2009]
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BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Publication Types, MeSH Terms

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Cited by 49 PubMed Central articles

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