BAliBASE: a benchmark alignment database for the e...[Bioinformatics. 1999]

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1: Bioinformatics. 1999 Jan;15(1):87-8. Links

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Thompson JD, Plewniak F, Poch O.

Institut de Génétique et de Biologie Moleculaire et Cellulaire (CNRS/INSERM/ULP), BP 163, 67404 Illkirch Cedex, France. julie@igbmc.u-strasbg.fr

SUMMARY: BAliBASE is a database of manually refined multiple sequence alignments categorized by core blocks of conservation sequence length, similarity, and the presence of insertions and N/C-terminal extensions. AVAILABILITY: From http://www-igbmc. u-strasbg.fr/BioInfo/BAliBASE/index.html

PMID: 10068696 [PubMed - indexed for MEDLINE]

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. [Nucleic Acids Res. 2001]
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. [Proteins. 2005]
RASCAL: rapid scanning and correction of multiple sequence alignments. [Bioinformatics. 2003]
Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set. [Bioinformatics. 2001]
GOAnno: GO annotation based on multiple alignment. [Bioinformatics. 2005]
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BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

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