Analysis of natural Prochlorococcus populations by flow cytometry. (Top) Side scatter (a function of cell size) plotted against red fluorescence of chlorophyll. (Bottom) Orange fluorescence of phycoerythrin plotted against red fluorescence of chlorophyll. All scales are 4-decades logarithmic from 1 to 10,000 (arbitrary units). (Left) Typical surface-layer sample (45 m, deep Equatorial Pacific, 7°S, 150°W, collected 10 November 94). Synechococcus is easily distinguished from Prochlorococcus by its orange phycoerythrin fluorescence. (Middle) Typical deep sample (105 m deep, Equatorial Pacific, 7°S, 150°W, collected 10 November 94). Synechococcus is virtually absent, and the chlorophyll fluorescence of Prochlorococcus is much higher than near the surface (compare the fluorescence of Prochlorococcus and that of the standard beads). Note also the weak orange fluorescence displayed by Prochlorococcus at this depth. (Right) Example of two Prochlorococcus populations coexisting at the same depth (80 m deep, Mediterranean Sea, 37°5′N, 16°52′E, collected 20 June 1996).